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Overview Single-instance Prediction Multi-instance Prediction Generation
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  • Multi-instance Prediction Problem
    • DTI Drug-Target Interaction
    • DDI Drug-Drug Interaction
    • PPI Protein-Protein Interaction
    • GDA Gene-Disease Association
    • DrugRes Drug Response Prediction
    • DrugSyn Drug Synergy Prediction
    • PeptideMHC Peptide-MHC Binding
    • AntibodyAff Antibody-Antigen Affinity
    • MTI miRNA-Target Interaction
    • Catalyst Catalyst Prediction
    • TCREpitopeBinding TCR-Epitope Binding
    • TrialOutcome Clinical Trial Outcome Prediction
    • ProteinPeptide Protein-Peptide Interaction
    • PerturbOutcome Counterfactual Prediction
    • scDTI Single-cell Drug-Target Interaction

  • Others
    • Single-instance Prediction Problem
    • Generation Problem

Multi-instance Prediction Datasets

Task Dataset
DTI BindingDB, DAVIS, KIBA
DDI Multi-typed DrugBank, TWOSIDES
PPI HuRI
GDA DisGeNET
DrugRes GDSC1, GDSC2
DrugSyn OncoPolyPharmacology, DrugComb_NCI60
PeptideMHC MHC1_IEDB-IMGT_Nielsen, MHC2_IEDB_Jensen
AntibodyAff Protein_SAbDab
MTI miRTarBase
Catalyst USPTO
TCREpitopeBinding Weber
TrialOutcome phase1, phase2, phase3
ProteinPeptide brown_mdm2_ace2_12ca5
PerturbOutcome scPerturb
scDTI OpenTargets Curated DTI (Li, Michelle et al)
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